Matt Stabeler

<!--?xml version="1.0"?-->
 
	<!--
<property name="DATASET" value="generated-comm" />-->
 
	<!-- messages take a constant delay to reach other nodes: 1000ms -->
 
	<!-- this experiment calculates the connected time data for all nodes -->
 
			<!--
<property name="aggregate-graph-task-rounding" value="8" /> -->

mattstabeler@erdos:~/GCE/master$ php -f ~/LocationSim/scripts/clustering/batchGCE.php ~/LocationSim/OUTPUT/edgelist-graphs/mit-nov-cheat/edge_list.dat

<!--?php
 
// must be run from the home directory of gce_serial.py
 
if(!file_exists("gce_serial.py")){
  die("must be run from the home directory of gce_serial.py (/home/mattstabeler/GCE/master/)rn");
  //exit();
}
 
$script = array_shift($argv);
foreach($argv as $infile){
 if(file_exists($infile)){
  $infiles[] = $infile;
 }else{
  throw new Exception("File does not exist: " . $infile);
 }
}
 
$datasets = array("mit-nov-cheat");
$ks = array(3,4,5);
$es = array(0.15,0.25);
$sts = array(0.9,0.5);
$maps = array(0.9,0.5);
$zs = array(0.2);
 
//~ /LocationSim/OUTPUT/edgelist-graphs/mit-nov-cheat/edge_list.dat
if(!$infiles){
  die("No files specifiedrn");
}
foreach($infiles as $infile){
 
  $infile = realpath($infile);
 
  $info = pathinfo($infile);
 
  $outfile = $info['dirname'] . "/" . $info['basename'] . "";
 
  $command = 'cat ' . $infile .' | cut -d " " -f "1,2,3" | python gce_serial.py -t5 -k${K}  similarityThreshold=${ST}  minAppearanceProp=${MAP} -e${E} -z${Z} --> ' . $outfile  . '.gce_output_K-${K}_ST-${ST}_MAP-${MAP}_E-${E}_Z-${Z}.dat';
 
  foreach($ks as $k){
   foreach($es as $e){
     foreach($sts as $st){
       foreach($maps as $map){
          foreach($zs as $z){
            $run = preg_replace('/${K}/', $k, $command);
            $run = preg_replace('/${E}/', $e, $run);
            $run = preg_replace('/${Z}/', $z, $run);
            $run = preg_replace('/${MAP}/', $map, $run);
            $run = preg_replace('/${ST}/', $st, $run);
            $data = passthru($run);
            //~ `$run`;
          }
        }
      }
    }
  }
 
}
?&gt;

mattstabeler@erdos:~/LocationSim/scripts/transform$ php -f ConvertGCEHOutput.php ~/LocationSim/OUTPUT/edgelist-graphs/mit-nov-cheat/edge_list.dat.gce_output*.dat

<!--?php
 
require "../objects/GCEHParser2.php";
 
$script = array_shift($argv);
foreach($argv as $infile){
 if(file_exists($infile)){
  $infiles[] = $infile;
 }else{
  throw new Exception("File does not exist: " . $infile);
 }
}
 
$force_parent = false;
$use_prefixes = false;
 
foreach($infiles as $infile){
  $parser = new GCEHParser($infile, $use_prefixes, $force_parent);
  $info = pathinfo($infile);
  $out_file = $info['dirname'] . '/'. $info['basename'] . "";
 
  if($force_parent){
    $out_file = $out_file  . ".global_parent";
  }
 
  file_put_contents($out_file . ".json", $parser--->toJson());
  file_put_contents($out_file . '.communites.dat', $parser-&gt;toSimCommunityList());
  file_put_contents($out_file . '.renumbered.dat', $parser-&gt;toString());
}
?&gt;

~/LocationSim/xml/datasets/gceh-communities.xml

<!--?xml version="1.0" standalone="yes" ?-->
 
	  <!-- this will make sure that we can use multiple values of K and it will load new communities each run-->

~/LocationSim/xml/bubbleH/centrality-k.xml

<!--?xml version="1.0"?-->
 
	<!--- This configuration creates the community ranking -->
 
								<!-- Create Global rankings (global.dat) -->
 
								<!-- Create local rankings (community.n.dat) -->
 
							 <!-- End repreat COMMUNITY_TYPE -->
						<!-- End repreat DATASET -->
 
				<!-- End repreat Z -->
				<!-- End repreat MAP -->
			<!-- End repreat ST  -->
		<!-- End repreat E -->
	<!-- End repreat K -->

~/LocationSim/xml/bubbleH/bubbleH-k.xml

<!--?xml version="1.0"?-->
 
                    <!-- This task resets the counters used by DEGREE and CONNECTION type metrics, but this must mean it is not a sliding window, but a fixed window mechanism -->

 mattstabeler@erdos:~/LocationSim$ java -jar dtnsim.jar xml/bubbleH/centrality-k.xml 10

 mattstabeler@erdos:~/LocationSim$ java -jar dtnsim.jar xml/bubbleH/bubbleH-k.xml 10

mattstabeler@erdos:~/LocationSim$ python scripts/plot/plot-barchart-special.py 2 2 OUTPUT/bubbleH/mit-nov-cheat-k-test/GCEH-*/bubbleH/0.all-pairs.dat